Update bleve and zapx to fix unaligned atomic (#22031) (#22218)

Backport #22031

There is an unaligned atomic field in zapx 15.3.5 which should have been
fixed in a subsequent patch

This bug causes issues on 32bit builds.

Update bleve and zapx to account for this.

Fix #21957

Signed-off-by: Andrew Thornton <art27@cantab.net>

custom/conf/app.example.ini

@@ -996,6 +996,9 @@ ROUTER = console
 ;;
 ;; Add co-authored-by and co-committed-by trailers if committer does not match author
 ;ADD_CO_COMMITTER_TRAILERS = true
+;;
+;; In addition to testing patches using the three-way merge method, re-test conflicting patches with git apply
+;TEST_CONFLICTING_PATCHES_WITH_GIT_APPLY = true
 
 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

docs/content/doc/advanced/config-cheat-sheet.en-us.md

@@ -101,6 +101,7 @@ Values containing `#` or `;` must be quoted using `` ` `` or `"""`.
 - `DEFAULT_MERGE_MESSAGE_OFFICIAL_APPROVERS_ONLY`: **true**: In default merge messages only include approvers who are officially allowed to review.
 - `POPULATE_SQUASH_COMMENT_WITH_COMMIT_MESSAGES`: **false**: In default squash-merge messages include the commit message of all commits comprising the pull request.
 - `ADD_CO_COMMITTER_TRAILERS`: **true**: Add co-authored-by and co-committed-by trailers to merge commit messages if committer does not match author.
+- `TEST_CONFLICTING_PATCHES_WITH_GIT_APPLY`: **true**: PR patches are tested using a three-way merge method to discover if there are conflicts. If this setting is set to **true**, conflicting patches will be retested using `git apply` - This was the previous behaviour in 1.18 (and earlier) but is somewhat inefficient. Please report if you find that this setting is required.
 
 ### Repository - Issue (`repository.issue`)
 

go.mod

@@ -15,8 +15,8 @@ require (
 	github.com/42wim/sshsig v0.0.0-20211121163825-841cf5bbc121
 	github.com/NYTimes/gziphandler v1.1.1
 	github.com/PuerkitoBio/goquery v1.8.0
-	github.com/alecthomas/chroma/v2 v2.3.0
-	github.com/blevesearch/bleve/v2 v2.3.4
+	github.com/alecthomas/chroma/v2 v2.4.0
+	github.com/blevesearch/bleve/v2 v2.3.5
 	github.com/buildkite/terminal-to-html/v3 v3.7.0
 	github.com/caddyserver/certmagic v0.17.2
 	github.com/chi-middleware/proxy v1.1.1
@@ -129,21 +129,21 @@ require (
 	github.com/beorn7/perks v1.0.1 // indirect
 	github.com/bgentry/speakeasy v0.1.0 // indirect
 	github.com/bits-and-blooms/bitset v1.3.3 // indirect
-	github.com/blevesearch/bleve_index_api v1.0.3 // indirect
-	github.com/blevesearch/geo v0.1.14 // indirect
+	github.com/blevesearch/bleve_index_api v1.0.4 // indirect
+	github.com/blevesearch/geo v0.1.15 // indirect
 	github.com/blevesearch/go-porterstemmer v1.0.3 // indirect
 	github.com/blevesearch/gtreap v0.1.1 // indirect
 	github.com/blevesearch/mmap-go v1.0.4 // indirect
-	github.com/blevesearch/scorch_segment_api/v2 v2.1.2 // indirect
+	github.com/blevesearch/scorch_segment_api/v2 v2.1.3 // indirect
 	github.com/blevesearch/segment v0.9.0 // indirect
 	github.com/blevesearch/snowballstem v0.9.0 // indirect
 	github.com/blevesearch/upsidedown_store_api v1.0.1 // indirect
-	github.com/blevesearch/vellum v1.0.8 // indirect
-	github.com/blevesearch/zapx/v11 v11.3.5 // indirect
-	github.com/blevesearch/zapx/v12 v12.3.5 // indirect
-	github.com/blevesearch/zapx/v13 v13.3.5 // indirect
-	github.com/blevesearch/zapx/v14 v14.3.5 // indirect
-	github.com/blevesearch/zapx/v15 v15.3.5 // indirect
+	github.com/blevesearch/vellum v1.0.9 // indirect
+	github.com/blevesearch/zapx/v11 v11.3.6 // indirect
+	github.com/blevesearch/zapx/v12 v12.3.6 // indirect
+	github.com/blevesearch/zapx/v13 v13.3.6 // indirect
+	github.com/blevesearch/zapx/v14 v14.3.6 // indirect
+	github.com/blevesearch/zapx/v15 v15.3.6 // indirect
 	github.com/boombuler/barcode v1.0.1 // indirect
 	github.com/bradfitz/gomemcache v0.0.0-20190913173617-a41fca850d0b // indirect
 	github.com/census-instrumentation/opencensus-proto v0.3.0 // indirect
@@ -302,6 +302,8 @@ replace github.com/shurcooL/vfsgen => github.com/lunny/vfsgen v0.0.0-20220105142
 
 replace github.com/satori/go.uuid v1.2.0 => github.com/gofrs/uuid v4.2.0+incompatible
 
+replace github.com/blevesearch/zapx/v15 v15.3.6 => github.com/zeripath/zapx/v15 v15.3.6-alignment-fix
+
 exclude github.com/gofrs/uuid v3.2.0+incompatible
 
 exclude github.com/gofrs/uuid v4.0.0+incompatible

go.sum

@@ -149,7 +149,6 @@ github.com/PuerkitoBio/purell v1.1.1/go.mod h1:c11w/QuzBsJSee3cPx9rAFu61PvFxuPbt
 github.com/PuerkitoBio/urlesc v0.0.0-20170810143723-de5bf2ad4578/go.mod h1:uGdkoq3SwY9Y+13GIhn11/XLaGBb4BfwItxLd5jeuXE=
 github.com/RoaringBitmap/roaring v0.4.23/go.mod h1:D0gp8kJQgE1A4LQ5wFLggQEyvDi06Mq5mKs52e1TwOo=
 github.com/RoaringBitmap/roaring v0.7.1/go.mod h1:jdT9ykXwHFNdJbEtxePexlFYH9LXucApeS0/+/g+p1I=
-github.com/RoaringBitmap/roaring v0.9.4/go.mod h1:icnadbWcNyfEHlYdr+tDlOTih1Bf/h+rzPpv4sbomAA=
 github.com/RoaringBitmap/roaring v1.2.1 h1:58/LJlg/81wfEHd5L9qsHduznOIhyv4qb1yWcSvVq9A=
 github.com/RoaringBitmap/roaring v1.2.1/go.mod h1:icnadbWcNyfEHlYdr+tDlOTih1Bf/h+rzPpv4sbomAA=
 github.com/Shopify/sarama v1.19.0/go.mod h1:FVkBWblsNy7DGZRfXLU0O9RCGt5g3g3yEuWXgklEdEo=
@@ -160,9 +159,10 @@ github.com/acomagu/bufpipe v1.0.3/go.mod h1:mxdxdup/WdsKVreO5GpW4+M/1CE2sMG4jeGJ
 github.com/afex/hystrix-go v0.0.0-20180502004556-fa1af6a1f4f5/go.mod h1:SkGFH1ia65gfNATL8TAiHDNxPzPdmEL5uirI2Uyuz6c=
 github.com/akavel/rsrc v0.8.0/go.mod h1:uLoCtb9J+EyAqh+26kdrTgmzRBFPGOolLWKpdxkKq+c=
 github.com/alcortesm/tgz v0.0.0-20161220082320-9c5fe88206d7/go.mod h1:6zEj6s6u/ghQa61ZWa/C2Aw3RkjiTBOix7dkqa1VLIs=
+github.com/alecthomas/assert/v2 v2.2.0 h1:f6L/b7KE2bfA+9O4FL3CM/xJccDEwPVYd5fALBiuwvw=
 github.com/alecthomas/chroma/v2 v2.2.0/go.mod h1:vf4zrexSH54oEjJ7EdB65tGNHmH3pGZmVkgTP5RHvAs=
-github.com/alecthomas/chroma/v2 v2.3.0 h1:83xfxrnjv8eK+Cf8qZDzNo3PPF9IbTWHs7z28GY6D0U=
-github.com/alecthomas/chroma/v2 v2.3.0/go.mod h1:mZxeWZlxP2Dy+/8cBob2PYd8O2DwNAzave5AY7A2eQw=
+github.com/alecthomas/chroma/v2 v2.4.0 h1:Loe2ZjT5x3q1bcWwemqyqEi8p11/IV/ncFCeLYDpWC4=
+github.com/alecthomas/chroma/v2 v2.4.0/go.mod h1:6kHzqF5O6FUSJzBXW7fXELjb+e+7OXW4UpoPqMO7IBQ=
 github.com/alecthomas/kingpin v2.2.6+incompatible/go.mod h1:59OFYbFVLKQKq+mqrL6Rw5bR0c3ACQaawgXx0QYndlE=
 github.com/alecthomas/repr v0.0.0-20220113201626-b1b626ac65ae/go.mod h1:2kn6fqh/zIyPLmm3ugklbEi5hg5wS435eygvNfaDQL8=
 github.com/alecthomas/repr v0.1.0 h1:ENn2e1+J3k09gyj2shc0dHr/yjaWSHRlrJ4DPMevDqE=
@@ -225,52 +225,47 @@ github.com/bits-and-blooms/bitset v1.3.3/go.mod h1:gIdJ4wp64HaoK2YrL1Q5/N7Y16edY
 github.com/bketelsen/crypt v0.0.3-0.20200106085610-5cbc8cc4026c/go.mod h1:MKsuJmJgSg28kpZDP6UIiPt0e0Oz0kqKNGyRaWEPv84=
 github.com/blakesmith/ar v0.0.0-20190502131153-809d4375e1fb/go.mod h1:PkYb9DJNAwrSvRx5DYA+gUcOIgTGVMNkfSCbZM8cWpI=
 github.com/blevesearch/bleve/v2 v2.0.5/go.mod h1:ZjWibgnbRX33c+vBRgla9QhPb4QOjD6fdVJ+R1Bk8LM=
-github.com/blevesearch/bleve/v2 v2.3.4 h1:SSb7/cwGzo85LWX1jchIsXM8ZiNNMX3shT5lROM63ew=
-github.com/blevesearch/bleve/v2 v2.3.4/go.mod h1:Ot0zYum8XQRfPcwhae8bZmNyYubynsoMjVvl1jPqL30=
+github.com/blevesearch/bleve/v2 v2.3.5 h1:1wuR7eB8Fk9UaCaBUfnQt5V7zIpi4VDok9ExN7Rl+/8=
+github.com/blevesearch/bleve/v2 v2.3.5/go.mod h1:FneKGHMRrCLrp4X9+iy3wlBqgM2ALucg7bp8jUuAi/s=
 github.com/blevesearch/bleve_index_api v1.0.0/go.mod h1:fiwKS0xLEm+gBRgv5mumf0dhgFr2mDgZah1pqv1c1M4=
-github.com/blevesearch/bleve_index_api v1.0.3 h1:DDSWaPXOZZJ2BB73ZTWjKxydAugjwywcqU+91AAqcAg=
 github.com/blevesearch/bleve_index_api v1.0.3/go.mod h1:fiwKS0xLEm+gBRgv5mumf0dhgFr2mDgZah1pqv1c1M4=
-github.com/blevesearch/geo v0.1.13/go.mod h1:cRIvqCdk3cgMhGeHNNe6yPzb+w56otxbfo1FBJfR2Pc=
-github.com/blevesearch/geo v0.1.14 h1:TTDpJN6l9ck/cUYbXSn4aCElNls0Whe44rcQKsB7EfU=
-github.com/blevesearch/geo v0.1.14/go.mod h1:cRIvqCdk3cgMhGeHNNe6yPzb+w56otxbfo1FBJfR2Pc=
-github.com/blevesearch/go-metrics v0.0.0-20201227073835-cf1acfcdf475/go.mod h1:9eJDeqxJ3E7WnLebQUlPD7ZjSce7AnDb9vjGmMCbD0A=
+github.com/blevesearch/bleve_index_api v1.0.4 h1:mtlzsyJjMIlDngqqB1mq8kPryUMIuEVVbRbJHOWEexU=
+github.com/blevesearch/bleve_index_api v1.0.4/go.mod h1:YXMDwaXFFXwncRS8UobWs7nvo0DmusriM1nztTlj1ms=
+github.com/blevesearch/geo v0.1.15 h1:0NybEduqE5fduFRYiUKF0uqybAIFKXYjkBdXKYn7oA4=
+github.com/blevesearch/geo v0.1.15/go.mod h1:cRIvqCdk3cgMhGeHNNe6yPzb+w56otxbfo1FBJfR2Pc=
 github.com/blevesearch/go-porterstemmer v1.0.3 h1:GtmsqID0aZdCSNiY8SkuPJ12pD4jI+DdXTAn4YRcHCo=
 github.com/blevesearch/go-porterstemmer v1.0.3/go.mod h1:angGc5Ht+k2xhJdZi511LtmxuEf0OVpvUUNrwmM1P7M=
-github.com/blevesearch/goleveldb v1.0.1/go.mod h1:WrU8ltZbIp0wAoig/MHbrPCXSOLpe79nz5lv5nqfYrQ=
 github.com/blevesearch/gtreap v0.1.1 h1:2JWigFrzDMR+42WGIN/V2p0cUvn4UP3C4Q5nmaZGW8Y=
 github.com/blevesearch/gtreap v0.1.1/go.mod h1:QaQyDRAT51sotthUWAH4Sj08awFSSWzgYICSZ3w0tYk=
 github.com/blevesearch/mmap-go v1.0.2/go.mod h1:ol2qBqYaOUsGdm7aRMRrYGgPvnwLe6Y+7LMvAB5IbSA=
 github.com/blevesearch/mmap-go v1.0.4 h1:OVhDhT5B/M1HNPpYPBKIEJaD0F3Si+CrEKULGCDPWmc=
 github.com/blevesearch/mmap-go v1.0.4/go.mod h1:EWmEAOmdAS9z/pi/+Toxu99DnsbhG1TIxUoRmJw/pSs=
 github.com/blevesearch/scorch_segment_api/v2 v2.0.1/go.mod h1:lq7yK2jQy1yQjtjTfU931aVqz7pYxEudHaDwOt1tXfU=
-github.com/blevesearch/scorch_segment_api/v2 v2.1.2 h1:TAte9VZLWda5WAVlZTTZ+GCzEHqGJb4iB2aiZSA6Iv8=
-github.com/blevesearch/scorch_segment_api/v2 v2.1.2/go.mod h1:rvoQXZGq8drq7vXbNeyiRzdEOwZkjkiYGf1822i6CRA=
+github.com/blevesearch/scorch_segment_api/v2 v2.1.3 h1:2UzpR2dR5DvSZk8tVJkcQ7D5xhoK/UBelYw8ttBHrRQ=
+github.com/blevesearch/scorch_segment_api/v2 v2.1.3/go.mod h1:eZrfp1y+lUh+DzFjUcTBUSnKGuunyFIpBIvqYVzJfvc=
 github.com/blevesearch/segment v0.9.0 h1:5lG7yBCx98or7gK2cHMKPukPZ/31Kag7nONpoBt22Ac=
 github.com/blevesearch/segment v0.9.0/go.mod h1:9PfHYUdQCgHktBgvtUOF4x+pc4/l8rdH0u5spnW85UQ=
-github.com/blevesearch/snowball v0.6.1/go.mod h1:ZF0IBg5vgpeoUhnMza2v0A/z8m1cWPlwhke08LpNusg=
 github.com/blevesearch/snowballstem v0.9.0 h1:lMQ189YspGP6sXvZQ4WZ+MLawfV8wOmPoD/iWeNXm8s=
 github.com/blevesearch/snowballstem v0.9.0/go.mod h1:PivSj3JMc8WuaFkTSRDW2SlrulNWPl4ABg1tC/hlgLs=
 github.com/blevesearch/upsidedown_store_api v1.0.1 h1:1SYRwyoFLwG3sj0ed89RLtM15amfX2pXlYbFOnF8zNU=
 github.com/blevesearch/upsidedown_store_api v1.0.1/go.mod h1:MQDVGpHZrpe3Uy26zJBf/a8h0FZY6xJbthIMm8myH2Q=
 github.com/blevesearch/vellum v1.0.3/go.mod h1:2u5ax02KeDuNWu4/C+hVQMD6uLN4txH1JbtpaDNLJRo=
 github.com/blevesearch/vellum v1.0.4/go.mod h1:cMhywHI0de50f7Nj42YgvyD6bFJ2WkNRvNBlNMrEVgY=
-github.com/blevesearch/vellum v1.0.8 h1:iMGh4lfxza4BnWO/UJTMPlI3HsK9YawjPv+TteVa9ck=
-github.com/blevesearch/vellum v1.0.8/go.mod h1:+cpRi/tqq49xUYSQN2P7A5zNSNrS+MscLeeaZ3J46UA=
+github.com/blevesearch/vellum v1.0.9 h1:PL+NWVk3dDGPCV0hoDu9XLLJgqU4E5s/dOeEJByQ2uQ=
+github.com/blevesearch/vellum v1.0.9/go.mod h1:ul1oT0FhSMDIExNjIxHqJoGpVrBpKCdgDQNxfqgJt7k=
 github.com/blevesearch/zapx/v11 v11.2.0/go.mod h1:gN/a0alGw1FZt/YGTo1G6Z6XpDkeOfujX5exY9sCQQM=
-github.com/blevesearch/zapx/v11 v11.3.5 h1:eBQWQ7huA+mzm0sAGnZDwgGGli7S45EO+N+ObFWssbI=
-github.com/blevesearch/zapx/v11 v11.3.5/go.mod h1:5UdIa/HRMdeRCiLQOyFESsnqBGiip7vQmYReA9toevU=
+github.com/blevesearch/zapx/v11 v11.3.6 h1:50jET4HUJ6eCqGxdhUt+mjybMvEX2MWyqLGtCx3yUgc=
+github.com/blevesearch/zapx/v11 v11.3.6/go.mod h1:B0CzJRj/pS7hJIroflRtFsa9mRHpMSucSgre0FVINns=
 github.com/blevesearch/zapx/v12 v12.2.0/go.mod h1:fdjwvCwWWwJW/EYTYGtAp3gBA0geCYGLcVTtJEZnY6A=
-github.com/blevesearch/zapx/v12 v12.3.5 h1:5pX2hU+R1aZihT7ac1dNWh1n4wqkIM9pZzWp0ANED9s=
-github.com/blevesearch/zapx/v12 v12.3.5/go.mod h1:ANcthYRZQycpbRut/6ArF5gP5HxQyJqiFcuJCBju/ss=
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+github.com/blevesearch/zapx/v12 v12.3.6/go.mod h1:iYi7tIKpauwU5os5wTxJITixr5Km21Hl365otMwdaP0=
 github.com/blevesearch/zapx/v13 v13.2.0/go.mod h1:o5rAy/lRS5JpAbITdrOHBS/TugWYbkcYZTz6VfEinAQ=
-github.com/blevesearch/zapx/v13 v13.3.5 h1:eJ3gbD+Nu8p36/O6lhfdvWQ4pxsGYSuTOBrLLPVWJ74=
-github.com/blevesearch/zapx/v13 v13.3.5/go.mod h1:FV+dRnScFgKnRDIp08RQL4JhVXt1x2HE3AOzqYa6fjo=
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 github.com/blevesearch/zapx/v14 v14.2.0/go.mod h1:GNgZusc1p4ot040cBQMRGEZobvwjCquiEKYh1xLFK9g=
-github.com/blevesearch/zapx/v14 v14.3.5 h1:hEvVjZaagFCvOUJrlFQ6/Z6Jjy0opM3g7TMEo58TwP4=
-github.com/blevesearch/zapx/v14 v14.3.5/go.mod h1:954A/eKFb+pg/ncIYWLWCKY+mIjReM9FGTGIO2Wu1cU=
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+github.com/blevesearch/zapx/v14 v14.3.6/go.mod h1:9X8W3XoikagU0rwcTqwZho7p9cC7m7zhPZO94S4wUvM=
 github.com/blevesearch/zapx/v15 v15.2.0/go.mod h1:MmQceLpWfME4n1WrBFIwplhWmaQbQqLQARpaKUEOs/A=
-github.com/blevesearch/zapx/v15 v15.3.5 h1:NVD0qq8vRk66ImJn1KloXT5ckqPDUZT7VbVJs9jKlac=
-github.com/blevesearch/zapx/v15 v15.3.5/go.mod h1:QMUh2hXCaYIWFKPYGavq/Iga2zbHWZ9DZAa9uFbWyvg=
 github.com/boombuler/barcode v1.0.1-0.20190219062509-6c824513bacc/go.mod h1:paBWMcWSl3LHKBqUq+rly7CNSldXjb2rDl3JlRe0mD8=
 github.com/boombuler/barcode v1.0.1 h1:NDBbPmhS+EqABEs5Kg3n/5ZNjy73Pz7SIV+KCeqyXcs=
 github.com/boombuler/barcode v1.0.1/go.mod h1:paBWMcWSl3LHKBqUq+rly7CNSldXjb2rDl3JlRe0mD8=
@@ -361,7 +356,6 @@ github.com/couchbase/goutils v0.0.0-20201030094643-5e82bb967e67/go.mod h1:BQwMFl
 github.com/couchbase/goutils v0.0.0-20210118111533-e33d3ffb5401 h1:4KDlx3vjalrHD/EfsjCpV91HNX3JPaIqRtt83zZ7x+Y=
 github.com/couchbase/goutils v0.0.0-20210118111533-e33d3ffb5401/go.mod h1:BQwMFlJzDjFDG3DJUdU0KORxn88UlsOULuxLExMh3Hs=
 github.com/couchbase/moss v0.1.0/go.mod h1:9MaHIaRuy9pvLPUJxB8sh8OrLfyDczECVL37grCIubs=
-github.com/couchbase/moss v0.2.0/go.mod h1:9MaHIaRuy9pvLPUJxB8sh8OrLfyDczECVL37grCIubs=
 github.com/cpuguy83/go-md2man v1.0.10/go.mod h1:SmD6nW6nTyfqj6ABTjUi3V3JVMnlJmwcJI5acqYI6dE=
 github.com/cpuguy83/go-md2man/v2 v2.0.0-20190314233015-f79a8a8ca69d/go.mod h1:maD7wRr/U5Z6m/iR4s+kqSMx2CaBsrgA7czyZG/E6dU=
 github.com/cpuguy83/go-md2man/v2 v2.0.0/go.mod h1:maD7wRr/U5Z6m/iR4s+kqSMx2CaBsrgA7czyZG/E6dU=
@@ -830,6 +824,7 @@ github.com/hashicorp/logutils v1.0.0/go.mod h1:QIAnNjmIWmVIIkWDTG1z5v++HQmx9WQRO
 github.com/hashicorp/mdns v1.0.0/go.mod h1:tL+uN++7HEJ6SQLQ2/p+z2pH24WQKWjBPkE0mNTz8vQ=
 github.com/hashicorp/memberlist v0.1.3/go.mod h1:ajVTdAv/9Im8oMAAj5G31PhhMCZJV2pPBoIllUwCN7I=
 github.com/hashicorp/serf v0.8.2/go.mod h1:6hOLApaqBFA1NXqRQAsxw9QxuDEvNxSQRwA/JwenrHc=
+github.com/hexops/gotextdiff v1.0.3 h1:gitA9+qJrrTCsiCl7+kh75nPqQt1cx4ZkudSTLoUqJM=
 github.com/hpcloud/tail v1.0.0/go.mod h1:ab1qPbhIpdTxEkNHXyeSf5vhxWSCs/tWer42PpOxQnU=
 github.com/huandu/xstrings v1.0.0/go.mod h1:4qWG/gcEcfX4z/mBDHJ++3ReCw9ibxbsNJbcucJdbSo=
 github.com/huandu/xstrings v1.2.0/go.mod h1:DvyZB1rfVYsBIigL8HwpZgxHwXozlTgGqn63UyNX5k4=
@@ -1487,6 +1482,8 @@ github.com/yuin/goldmark-highlighting/v2 v2.0.0-20220924101305-151362477c87/go.m
 github.com/yuin/goldmark-meta v1.1.0 h1:pWw+JLHGZe8Rk0EGsMVssiNb/AaPMHfSRszZeUeiOUc=
 github.com/yuin/goldmark-meta v1.1.0/go.mod h1:U4spWENafuA7Zyg+Lj5RqK/MF+ovMYtBvXi1lBb2VP0=
 github.com/zenazn/goji v0.9.0/go.mod h1:7S9M489iMyHBNxwZnk9/EHS098H4/F6TATF2mIxtB1Q=
+github.com/zeripath/zapx/v15 v15.3.6-alignment-fix h1:fKZ9OxEDoJKgM0KBXRbSb5IgKUEXis6C3zEIiMtzzQ0=
+github.com/zeripath/zapx/v15 v15.3.6-alignment-fix/go.mod h1:5DbhhDTGtuQSns1tS2aJxJLPc91boXCvjOMeCLD1saM=
 github.com/ziutek/mymysql v1.5.4/go.mod h1:LMSpPZ6DbqWFxNCHW77HeMg9I646SAhApZ/wKdgO/C0=
 github.com/zmap/rc2 v0.0.0-20131011165748-24b9757f5521/go.mod h1:3YZ9o3WnatTIZhuOtot4IcUfzoKVjUHqu6WALIyI0nE=
 github.com/zmap/zcertificate v0.0.0-20180516150559-0e3d58b1bac4/go.mod h1:5iU54tB79AMBcySS0R2XIyZBAVmeHranShAFELYx7is=

modules/setting/repository.go

@@ -83,6 +83,7 @@ var (
 			DefaultMergeMessageOfficialApproversOnly bool
 			PopulateSquashCommentWithCommitMessages  bool
 			AddCoCommitterTrailers                   bool
+			TestConflictingPatchesWithGitApply       bool
 		} `ini:"repository.pull-request"`
 
 		// Issue Setting
@@ -205,6 +206,7 @@ var (
 			DefaultMergeMessageOfficialApproversOnly bool
 			PopulateSquashCommentWithCommitMessages  bool
 			AddCoCommitterTrailers                   bool
+			TestConflictingPatchesWithGitApply       bool
 		}{
 			WorkInProgressPrefixes: []string{"WIP:", "[WIP]"},
 			// Same as GitHub. See
@@ -219,6 +221,7 @@ var (
 			DefaultMergeMessageOfficialApproversOnly: true,
 			PopulateSquashCommentWithCommitMessages:  false,
 			AddCoCommitterTrailers:                   true,
+			TestConflictingPatchesWithGitApply:       true,
 		},
 
 		// Issue settings

routers/api/v1/repo/pull.go

@@ -491,6 +491,11 @@ func EditPullRequest(ctx *context.APIContext) {
 	issue := pr.Issue
 	issue.Repo = ctx.Repo.Repository
 
+	if err := issue.LoadAttributes(ctx); err != nil {
+		ctx.Error(http.StatusInternalServerError, "LoadAttributes", err)
+		return
+	}
+
 	if !issue.IsPoster(ctx.Doer.ID) && !ctx.Repo.CanWrite(unit.TypePullRequests) {
 		ctx.Status(http.StatusForbidden)
 		return

services/pull/patch.go

@@ -23,6 +23,7 @@ import (
 	"code.gitea.io/gitea/modules/log"
 	"code.gitea.io/gitea/modules/process"
 	repo_module "code.gitea.io/gitea/modules/repository"
+	"code.gitea.io/gitea/modules/setting"
 	"code.gitea.io/gitea/modules/util"
 
 	"github.com/gobwas/glob"
@@ -289,13 +290,15 @@ func checkConflicts(ctx context.Context, pr *issues_model.PullRequest, gitRepo *
 
 	// 2. AttemptThreeWayMerge first - this is much quicker than plain patch to base
 	description := fmt.Sprintf("PR[%d] %s/%s#%d", pr.ID, pr.BaseRepo.OwnerName, pr.BaseRepo.Name, pr.Index)
-	conflict, _, err := AttemptThreeWayMerge(ctx,
+	conflict, conflictFiles, err := AttemptThreeWayMerge(ctx,
 		tmpBasePath, gitRepo, pr.MergeBase, "base", "tracking", description)
 	if err != nil {
 		return false, err
 	}
 
 	if !conflict {
+		// No conflicts detected so we need to check if the patch is empty...
+		// a. Write the newly merged tree and check the new tree-hash
 		var treeHash string
 		treeHash, _, err = git.NewCommand(ctx, "write-tree").RunStdString(&git.RunOpts{Dir: tmpBasePath})
 		if err != nil {
@@ -307,6 +310,8 @@ func checkConflicts(ctx context.Context, pr *issues_model.PullRequest, gitRepo *
 		if err != nil {
 			return false, err
 		}
+
+		// b. compare the new tree-hash with the base tree hash
 		if treeHash == baseTree.ID.String() {
 			log.Debug("PullRequest[%d]: Patch is empty - ignoring", pr.ID)
 			pr.Status = issues_model.PullRequestStatusEmpty
@@ -315,9 +320,17 @@ func checkConflicts(ctx context.Context, pr *issues_model.PullRequest, gitRepo *
 		return false, nil
 	}
 
-	// 3. OK read-tree has failed so we need to try a different thing - this might actually succeed where the above fails due to whitespace handling.
+	// 3. OK the three-way merge method has detected conflicts
+	// 3a. Are still testing with GitApply? If not set the conflict status and move on
+	if !setting.Repository.PullRequest.TestConflictingPatchesWithGitApply {
+		pr.Status = issues_model.PullRequestStatusConflict
+		pr.ConflictedFiles = conflictFiles
 
-	// 3a. Create a plain patch from head to base
+		log.Trace("Found %d files conflicted: %v", len(pr.ConflictedFiles), pr.ConflictedFiles)
+		return true, nil
+	}
+
+	// 3b. Create a plain patch from head to base
 	tmpPatchFile, err := os.CreateTemp("", "patch")
 	if err != nil {
 		log.Error("Unable to create temporary patch file! Error: %v", err)
@@ -340,8 +353,9 @@ func checkConflicts(ctx context.Context, pr *issues_model.PullRequest, gitRepo *
 	patchPath := tmpPatchFile.Name()
 	tmpPatchFile.Close()
 
-	// 3b. if the size of that patch is 0 - there can be no conflicts!
+	// 3c. if the size of that patch is 0 - there can be no conflicts!
 	if stat.Size() == 0 {
+		log.Critical("git-apply--check patch checker found empty PR when read-tree found conflicts in PR#%d[%d] in %#-v", pr.Index, pr.ID, pr.BaseRepo)
 		log.Debug("PullRequest[%d]: Patch is empty - ignoring", pr.ID)
 		pr.Status = issues_model.PullRequestStatusEmpty
 		return false, nil
@@ -472,6 +486,8 @@ func checkConflicts(ctx context.Context, pr *issues_model.PullRequest, gitRepo *
 	} else if err != nil {
 		return false, fmt.Errorf("git apply --check: %w", err)
 	}
+
+	log.Critical("git-apply--check patch checker found no conflicts when read-tree found conflicts in PR#%d[%d] in %#-v", pr.Index, pr.ID, pr.BaseRepo)
 	return false, nil
 }
 

templates/package/content/container.tmpl

@@ -46,7 +46,7 @@
 	{{end}}
 	{{if .PackageDescriptor.Metadata.ImageLayers}}
 		<h4 class="ui top attached header">{{.locale.Tr "packages.container.layers"}}</h4>
-		<div class="ui attached segment">
+		<div class="ui attached segment word-break">
 			<table class="ui very basic compact table">
 				<tbody>
 					{{range .PackageDescriptor.Metadata.ImageLayers}}