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3fe0ecaf1d
* MDAL version 1.3.0 * change type * change types * fix clang-tidy issues * fix error * update expected 2DM mesh with scientific notation * XMDF driver can have slash (/) in layer name (path in file)
126 lines
3.9 KiB
C++
126 lines
3.9 KiB
C++
/*
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MDAL - Mesh Data Abstraction Library (MIT License)
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Copyright (C) 2018 Peter Petrik (zilolv at gmail dot com)
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*/
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#ifndef MDAL_XMDF_HPP
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#define MDAL_XMDF_HPP
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#include <string>
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#include <vector>
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#include <memory>
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#include <iosfwd>
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#include <iostream>
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#include <fstream>
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#include "mdal_data_model.hpp"
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#include "mdal.h"
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#include "mdal_hdf5.hpp"
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#include "mdal_driver.hpp"
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namespace MDAL
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{
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/**
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* The XmdfDataset reads the data directly from HDF5 file
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* by usage of hyperslabs retrieval. This format is used by TUFLOW and HYDRO_AS-2D
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* basically all (timesteps) data for one particular dataset groups
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* are stored in single
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* 3D arrays (time, x, y) for vector datasets
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* 2D arrays (time, x) for scalar datasets
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* 2D arrays (time, active) for active flags (optional, supported by default)
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*
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* For TUFLOW, the dataset groups are structured with a tree starting from a unique group and datasets support active flag value.
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*
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* For HYDRO_AS-2D, all the groups are on the root of the file and the datasets don't support active flag value.
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*
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*/
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class XmdfDataset: public Dataset2D
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{
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public:
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XmdfDataset( DatasetGroup *grp,
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const HdfDataset &valuesDs,
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const HdfDataset &activeDs,
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hsize_t timeIndex );
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~XmdfDataset() override;
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size_t scalarData( size_t indexStart, size_t count, double *buffer ) override;
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size_t vectorData( size_t indexStart, size_t count, double *buffer ) override;
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size_t activeData( size_t indexStart, size_t count, int *buffer ) override;
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const HdfDataset &dsValues() const;
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const HdfDataset &dsActive() const;
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hsize_t timeIndex() const;
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private:
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HdfDataset mHdf5DatasetValues;
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HdfDataset mHdf5DatasetActive;
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// index or row where the data for this timestep begins
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hsize_t mTimeIndex;
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};
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class DriverXmdf: public Driver
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{
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public:
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/**
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* Driver for XMDF Files
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*
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* Structure of the TUFLOW file. Groups are optional since it depends
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* on tools which groups are created.
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* - root
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* - Temporal
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* - Depth
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* - Velocity
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* - ..
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* - Maximums
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* - Depth
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* - Velocity
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* - ..
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* - Difference (res_to_res.exe TUFLOW utility tool)
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* - ..
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* - Times (e.g. time of peak velocity)
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* - ..
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* - ...
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*/
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DriverXmdf();
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~DriverXmdf( ) override = default;
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DriverXmdf *create() override;
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bool canReadDatasets( const std::string &uri ) override;
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void load( const std::string &datFile, Mesh *mesh ) override;
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bool canReadMesh( const std::string &uri ) override;
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std::unique_ptr< Mesh > load( const std::string &meshFile, const std::string &meshName = "" ) override;
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private:
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MDAL::Mesh *mMesh = nullptr;
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std::string mDatFile;
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std::shared_ptr<MDAL::DatasetGroup> readXmdfGroupAsDatasetGroup(
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const HdfGroup &rootGroup,
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const std::string &groupName,
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size_t vertexCount,
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size_t faceCount ) const;
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void addDatasetGroupsFromXmdfGroup(
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DatasetGroups &groups,
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const HdfGroup &rootGroup,
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const std::string &nameSuffix,
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size_t vertexCount,
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size_t faceCount ) const;
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void readGroupsTree( HdfFile &file,
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const std::string &name,
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MDAL::DatasetGroups &groups,
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size_t vertexCount,
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size_t faceCount ) const;
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std::string buildUri( const std::string &meshFile ) override;
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std::vector<std::string> findMeshesNames() const;
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std::vector<std::string> meshGroupPaths( const HdfGroup &group ) const;
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std::vector<std::string> meshGroupPaths( const HdfFile &file ) const;
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};
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} // namespace MDAL
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#endif //MDAL_ASCII_DAT_HPP
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