# -*- coding: utf-8 -*- """ *************************************************************************** BasicStatistics.py --------------------- Date : November 2016 Copyright : (C) 2016 by Nyall Dawson Email : nyall dot dawson at gmail dot com *************************************************************************** * * * This program is free software; you can redistribute it and/or modify * * it under the terms of the GNU General Public License as published by * * the Free Software Foundation; either version 2 of the License, or * * (at your option) any later version. * * * *************************************************************************** """ __author__ = 'Nyall Dawson' __date__ = 'November 2016' __copyright__ = '(C) 2016, Nyall Dawson' # This will get replaced with a git SHA1 when you do a git archive __revision__ = '$Format:%H$' import os import codecs from qgis.PyQt.QtCore import QVariant from qgis.PyQt.QtGui import QIcon from qgis.core import (QgsStatisticalSummary, QgsStringStatisticalSummary, QgsDateTimeStatisticalSummary, QgsFeatureRequest) from processing.core.GeoAlgorithm import GeoAlgorithm from processing.core.parameters import ParameterTable from processing.core.parameters import ParameterTableField from processing.core.outputs import OutputHTML from processing.core.outputs import OutputNumber from processing.tools import dataobjects, vector pluginPath = os.path.split(os.path.split(os.path.dirname(__file__))[0])[0] class BasicStatisticsForField(GeoAlgorithm): INPUT_LAYER = 'INPUT_LAYER' FIELD_NAME = 'FIELD_NAME' OUTPUT_HTML_FILE = 'OUTPUT_HTML_FILE' MIN = 'MIN' MAX = 'MAX' COUNT = 'COUNT' UNIQUE = 'UNIQUE' EMPTY = 'EMPTY' FILLED = 'FILLED' MIN_LENGTH = 'MIN_LENGTH' MAX_LENGTH = 'MAX_LENGTH' MEAN_LENGTH = 'MEAN_LENGTH' CV = 'CV' SUM = 'SUM' MEAN = 'MEAN' STD_DEV = 'STD_DEV' RANGE = 'RANGE' MEDIAN = 'MEDIAN' MINORITY = 'MINORITY' MAJORITY = 'MAJORITY' FIRSTQUARTILE = 'FIRSTQUARTILE' THIRDQUARTILE = 'THIRDQUARTILE' IQR = 'IQR' def getIcon(self): return QIcon(os.path.join(pluginPath, 'images', 'ftools', 'basic_statistics.png')) def defineCharacteristics(self): self.name, self.i18n_name = self.trAlgorithm('Basic statistics for fields') self.group, self.i18n_group = self.trAlgorithm('Vector table tools') self.tags = self.tr('stats,statistics,date,time,datetime,string,number,text,table,layer,maximum,minimum,mean,average,standard,deviation,' 'count,distinct,unique,variance,median,quartile,range,majority,minority') self.addParameter(ParameterTable(self.INPUT_LAYER, self.tr('Input table'))) self.addParameter(ParameterTableField(self.FIELD_NAME, self.tr('Field to calculate statistics on'), self.INPUT_LAYER)) self.addOutput(OutputHTML(self.OUTPUT_HTML_FILE, self.tr('Statistics'))) self.addOutput(OutputNumber(self.COUNT, self.tr('Count'))) self.addOutput(OutputNumber(self.UNIQUE, self.tr('Number of unique values'))) self.addOutput(OutputNumber(self.EMPTY, self.tr('Number of empty (null) values'))) self.addOutput(OutputNumber(self.FILLED, self.tr('Number of non-empty values'))) self.addOutput(OutputNumber(self.MIN, self.tr('Minimum value'))) self.addOutput(OutputNumber(self.MAX, self.tr('Maximum value'))) self.addOutput(OutputNumber(self.MIN_LENGTH, self.tr('Minimum length'))) self.addOutput(OutputNumber(self.MAX_LENGTH, self.tr('Maximum length'))) self.addOutput(OutputNumber(self.MEAN_LENGTH, self.tr('Mean length'))) self.addOutput(OutputNumber(self.CV, self.tr('Coefficient of Variation'))) self.addOutput(OutputNumber(self.SUM, self.tr('Sum'))) self.addOutput(OutputNumber(self.MEAN, self.tr('Mean value'))) self.addOutput(OutputNumber(self.STD_DEV, self.tr('Standard deviation'))) self.addOutput(OutputNumber(self.RANGE, self.tr('Range'))) self.addOutput(OutputNumber(self.MEDIAN, self.tr('Median'))) self.addOutput(OutputNumber(self.MINORITY, self.tr('Minority (rarest occurring value)'))) self.addOutput(OutputNumber(self.MAJORITY, self.tr('Majority (most frequently occurring value)'))) self.addOutput(OutputNumber(self.FIRSTQUARTILE, self.tr('First quartile'))) self.addOutput(OutputNumber(self.THIRDQUARTILE, self.tr('Third quartile'))) self.addOutput(OutputNumber(self.IQR, self.tr('Interquartile Range (IQR)'))) def processAlgorithm(self, feedback): layer = dataobjects.getObjectFromUri( self.getParameterValue(self.INPUT_LAYER)) field_name = self.getParameterValue(self.FIELD_NAME) field = layer.fields().at(layer.fields().lookupField(field_name)) output_file = self.getOutputValue(self.OUTPUT_HTML_FILE) request = QgsFeatureRequest().setFlags(QgsFeatureRequest.NoGeometry).setSubsetOfAttributes([field_name], layer.fields()) features = vector.features(layer, request) data = [] data.append(self.tr('Analyzed layer: {}').format(layer.name())) data.append(self.tr('Analyzed field: {}').format(field_name)) if field.isNumeric(): data.extend(self.calcNumericStats(features, feedback, field)) elif field.type() in (QVariant.Date, QVariant.Time, QVariant.DateTime): data.extend(self.calcDateTimeStats(features, feedback, field)) else: data.extend(self.calcStringStats(features, feedback, field)) self.createHTML(output_file, data) def calcNumericStats(self, features, feedback, field): count = len(features) total = 100.0 / float(count) stat = QgsStatisticalSummary() for current, ft in enumerate(features): stat.addVariant(ft[field.name()]) feedback.setProgress(int(current * total)) stat.finalize() cv = stat.stDev() / stat.mean() if stat.mean() != 0 else 0 self.setOutputValue(self.COUNT, stat.count()) self.setOutputValue(self.UNIQUE, stat.variety()) self.setOutputValue(self.EMPTY, stat.countMissing()) self.setOutputValue(self.FILLED, count - stat.countMissing()) self.setOutputValue(self.MIN, stat.min()) self.setOutputValue(self.MAX, stat.max()) self.setOutputValue(self.RANGE, stat.range()) self.setOutputValue(self.SUM, stat.sum()) self.setOutputValue(self.MEAN, stat.mean()) self.setOutputValue(self.MEDIAN, stat.median()) self.setOutputValue(self.STD_DEV, stat.stDev()) self.setOutputValue(self.CV, cv) self.setOutputValue(self.MINORITY, stat.minority()) self.setOutputValue(self.MAJORITY, stat.majority()) self.setOutputValue(self.FIRSTQUARTILE, stat.firstQuartile()) self.setOutputValue(self.THIRDQUARTILE, stat.thirdQuartile()) self.setOutputValue(self.IQR, stat.interQuartileRange()) data = [] data.append(self.tr('Count: {}').format(stat.count())) data.append(self.tr('Unique values: {}').format(stat.variety())) data.append(self.tr('NULL (missing) values: {}').format(stat.countMissing())) data.append(self.tr('Minimum value: {}').format(stat.min())) data.append(self.tr('Maximum value: {}').format(stat.max())) data.append(self.tr('Range: {}').format(stat.range())) data.append(self.tr('Sum: {}').format(stat.sum())) data.append(self.tr('Mean value: {}').format(stat.mean())) data.append(self.tr('Median value: {}').format(stat.median())) data.append(self.tr('Standard deviation: {}').format(stat.stDev())) data.append(self.tr('Coefficient of Variation: {}').format(cv)) data.append(self.tr('Minority (rarest occurring value): {}').format(stat.minority())) data.append(self.tr('Majority (most frequently occurring value): {}').format(stat.majority())) data.append(self.tr('First quartile: {}').format(stat.firstQuartile())) data.append(self.tr('Third quartile: {}').format(stat.thirdQuartile())) data.append(self.tr('Interquartile Range (IQR): {}').format(stat.interQuartileRange())) return data def calcStringStats(self, features, feedback, field): count = len(features) total = 100.0 / float(count) stat = QgsStringStatisticalSummary() for current, ft in enumerate(features): stat.addValue(ft[field.name()]) feedback.setProgress(int(current * total)) stat.finalize() self.setOutputValue(self.COUNT, stat.count()) self.setOutputValue(self.UNIQUE, stat.countDistinct()) self.setOutputValue(self.EMPTY, stat.countMissing()) self.setOutputValue(self.FILLED, stat.count() - stat.countMissing()) self.setOutputValue(self.MIN, stat.min()) self.setOutputValue(self.MAX, stat.max()) self.setOutputValue(self.MIN_LENGTH, stat.minLength()) self.setOutputValue(self.MAX_LENGTH, stat.maxLength()) self.setOutputValue(self.MEAN_LENGTH, stat.meanLength()) data = [] data.append(self.tr('Count: {}').format(count)) data.append(self.tr('Unique values: {}').format(stat.countDistinct())) data.append(self.tr('NULL (missing) values: {}').format(stat.countMissing())) data.append(self.tr('Minimum value: {}').format(stat.min())) data.append(self.tr('Maximum value: {}').format(stat.max())) data.append(self.tr('Minimum length: {}').format(stat.minLength())) data.append(self.tr('Maximum length: {}').format(stat.maxLength())) data.append(self.tr('Mean length: {}').format(stat.meanLength())) return data def calcDateTimeStats(self, features, feedback, field): count = len(features) total = 100.0 / float(count) stat = QgsDateTimeStatisticalSummary() for current, ft in enumerate(features): stat.addValue(ft[field.name()]) feedback.setProgress(int(current * total)) stat.finalize() self.setOutputValue(self.COUNT, stat.count()) self.setOutputValue(self.UNIQUE, stat.countDistinct()) self.setOutputValue(self.EMPTY, stat.countMissing()) self.setOutputValue(self.FILLED, stat.count() - stat.countMissing()) self.setOutputValue(self.MIN, stat.statistic(QgsDateTimeStatisticalSummary.Min)) self.setOutputValue(self.MAX, stat.statistic(QgsDateTimeStatisticalSummary.Max)) data = [] data.append(self.tr('Count: {}').format(count)) data.append(self.tr('Unique values: {}').format(stat.countDistinct())) data.append(self.tr('NULL (missing) values: {}').format(stat.countMissing())) data.append(self.tr('Minimum value: {}').format(field.displayString(stat.statistic(QgsDateTimeStatisticalSummary.Min)))) data.append(self.tr('Maximum value: {}').format(field.displayString(stat.statistic(QgsDateTimeStatisticalSummary.Max)))) return data def createHTML(self, outputFile, algData): with codecs.open(outputFile, 'w', encoding='utf-8') as f: f.write('\n') f.write('\n') for s in algData: f.write('

' + str(s) + '

\n') f.write('\n')