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remove broken R scripts
This commit is contained in:
Giovanni Manghi
parent
c6735cc893
commit
15323b8b8b
@ -1,8 +0,0 @@
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##Home Range Analysis=group
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##Layer=vector
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##Field=Field Layer
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##Home_ranges=Output vector
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library(adehabitatHR)
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library(deldir)
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res <- CharHull(Layer[,Field])
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Home_ranges<-getverticeshr(res)
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@ -1,26 +0,0 @@
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(dp0
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S'ALG_DESC'
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p1
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VThis script computes the Characteristic Hull method that relies on the calculation of the Delaunay triangulation of the set of relocations. Then, the triangles are ordered according to their area (and not their perimeter). The smallest triangles correspond to the areas the most intensively used by the animals. It is then possible to derive the home range estimated for a given percentage level.\u000a\u000aR depencies: library "adehabitatHR" and "deldir".\u000a
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p2
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sS'Home_ranges'
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p3
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VThe home-range contours.
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p4
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sS'ALG_CREATOR'
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p5
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VFilipe S. Dias, filipesdias(at)gmail.com
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p6
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sS'Layer'
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p7
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VA layer containing the relocations of one or more animals
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p8
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sS'Field'
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p9
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VThe field containing the unique indentifer for each animal (type "string").
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p10
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sS'ALG_HELP_CREATOR'
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p11
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VFilipe S. Dias, filipesdias(at)gmail.com
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p12
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s.
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##Vector processing=group
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##Layer = vector
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##showplots
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##Field=Field Layer
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dotchart(Layer[[Field]],main=paste("Dotplot of",Field),xlab=paste(Field),ylab="Observation number")
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@ -1,22 +0,0 @@
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(dp0
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S'ALG_CREATOR'
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p1
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VFilipe S. Dias
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p2
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sS'Field'
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p3
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VA numeric field.
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p4
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sS'ALG_DESC'
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p5
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VThis tool uses dotchart() to create a dotplot using the values from a numeric field.\u000a
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p6
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sS'Layer'
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p7
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VA vector layer with a numeric field.
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p8
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sS'ALG_HELP_CREATOR'
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p9
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VFilipe S. Dias
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p10
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s.
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@ -1,15 +0,0 @@
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##Home Range Analysis=group
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##Layer=vector
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##Field=Field Layer
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##Grid=number 10
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##Percentage=number 10
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##Home_ranges=Output vector
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##Folder=folder
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library(adehabitatHR)
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Layer[,Field]->relocs
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kud <- kernelUD(relocs, grid=,Grid, h="href")
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names(kud)->Names
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for(i in 1:length(Names)){
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writeGDAL(kud[[i]],paste(paste(Folder,"/",sep=""),paste(Names[i],".tiff",sep=""), sep=""),drivername="GTiff")
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}
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Home_ranges<- getverticeshr(kud,percent=Percentage)
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@ -1,38 +0,0 @@
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(dp0
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S'ALG_DESC'
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p1
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VThis algorithm computes the home range of one or more animals using a kernel density estimator and it uses the ad-hoc method to estimate the "h" parameter (href).\u000a\u000aR depencies: library "adehabitatHR"
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p2
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sS'Home_ranges'
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p3
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VA vector containing the home ranges corresponding to the smallest area on which the probability of relocating an animal is equal to value chosen for the "Percentage" parameter.\u000a
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p4
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sS'ALG_CREATOR'
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p5
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VFilipe S. Dias, filipesdias(at)gmail.com \u000a \u000a
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p6
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sS'Layer'
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p7
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VA vector containing the relocations of one or more animails.
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p8
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sS'Field'
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p9
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VThe field that contains the unique identifier (type "string") for each animal.
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p10
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sS'Grid'
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p11
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VThe size of the grid (number of cells) on which the utilization distribution is calculated by the kernel function.
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p12
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sS'ALG_HELP_CREATOR'
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p13
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VFilipe S. Dias, filipesdias(at)gmail.com
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p14
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sS'Folder'
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p15
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VThe ouput folder where the rasters containing the utilization distributions generated for each animal by the kernel funciton will be sent.
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p16
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sS'Percentage'
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p17
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VA single value giving the percentage level for home-range estimation. \u000a\u000aFor example, Percentage= 95 corresponds to the smallest area on which the probability to relocate the animal is equal to 0,95.
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p18
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s.
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@ -1,12 +0,0 @@
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##Home Range Analysis=group
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##showplots
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##Layer=vector
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##Field=Field Layer
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##Percentage=number 10
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##Home_ranges=Output vector
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library(adehabitatHR)
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uu<-clusthr(Layer[,Field])
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Home_ranges<-getverticeshr(uu,percent=Percentage)
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ii <- MCHu2hrsize(uu, percent=seq(50, 100, by=5))
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par(mar=c(2,2,2,2))
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plot(ii)
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@ -1,34 +0,0 @@
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(dp0
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S'ALG_DESC'
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p1
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VThis script estimates the home range of one or more animals by single-linkage cluster analysis.\u000a\u000aR depencies: library "adehabitatHR"
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p2
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sS'Home_ranges'
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p3
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VA multipart vector layer containing the home ranges of each animal, according to the selected "Percentage" value.
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p4
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sS'ALG_CREATOR'
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p5
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VFilipe S. Dias, filipesdias(at)gmail.com
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p6
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sS'Layer'
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p7
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VA vector layer containing the relocations of one or more animals.
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p8
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sS'Field'
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p9
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VThe field that contains the unique identifier (type "string") for each animal.
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p10
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sS'RPLOTS'
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p11
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VA plot showing the relationship between the home range size and the percentage of relocations included in the home range.\u000a
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p12
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sS'ALG_HELP_CREATOR'
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p13
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VFilipe S. Dias, filipesdias(at)gmail.com
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p14
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sS'Percentage'
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p15
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VPercentage of the relocations used in the calculations.
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p16
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s.
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