diff --git a/cmake_templates/Doxyfile.in b/cmake_templates/Doxyfile.in
index d2ced66f668..330dc3fb1ad 100644
--- a/cmake_templates/Doxyfile.in
+++ b/cmake_templates/Doxyfile.in
@@ -623,7 +623,6 @@ INPUT_ENCODING         = UTF-8
 # *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90
 
 FILE_PATTERNS          = *.h \
-                         *.cpp \
                          *.dox
 
 # The RECURSIVE tag can be used to turn specify whether or not subdirectories
diff --git a/tests/src/python/test_qgsdoccoverage.py b/tests/src/python/test_qgsdoccoverage.py
index f5682435295..69a82b4d17b 100644
--- a/tests/src/python/test_qgsdoccoverage.py
+++ b/tests/src/python/test_qgsdoccoverage.py
@@ -27,7 +27,7 @@ from PyQt4.QtCore import qDebug
 # DON'T RAISE THIS THRESHOLD!!!
 # (changes which lower this threshold are welcomed though!)
 
-ACCEPTABLE_MISSING_DOCS = 3839
+ACCEPTABLE_MISSING_DOCS = 3827
 
 
 class TestQgsDocCoverage(TestCase):
diff --git a/tests/src/python/test_qgssipcoverage.py b/tests/src/python/test_qgssipcoverage.py
index e59c222b23b..93084c2ffa0 100644
--- a/tests/src/python/test_qgssipcoverage.py
+++ b/tests/src/python/test_qgssipcoverage.py
@@ -37,7 +37,7 @@ except:
 # DON'T RAISE THIS THRESHOLD!!!
 # (changes which lower this threshold are welcomed though!)
 
-ACCEPTABLE_MISSING_CLASSES = 80
+ACCEPTABLE_MISSING_CLASSES = 69
 ACCEPTABLE_MISSING_MEMBERS = 264